transcriptome topic

List transcriptome repositories

isONclust

43
Stars
7
Forks
Watchers

De novo clustering of long transcript reads into genes

NanoSim

215
Stars
51
Forks
Watchers

Nanopore sequence read simulator

pancancer

119
Stars
58
Forks
Watchers

Building classifiers using cancer transcriptomes across 33 different cancer-types

scCATCH

205
Stars
36
Forks
Watchers

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

salmon

739
Stars
160
Forks
Watchers

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

get_homologues

101
Stars
25
Forks
Watchers

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

GeneTonic

75
Stars
8
Forks
Watchers

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

STARTapp

87
Stars
42
Forks
Watchers

The START App: R Shiny Transcriptome Analysis Resource Tool

mavis

72
Stars
13
Forks
Watchers

Merging, Annotation, Validation, and Illustration of Structural variants

TALON

128
Stars
29
Forks
Watchers

Technology agnostic long read analysis pipeline for transcriptomes