rna-seq topic

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

COMBINE-lab

Table of software for the analysis of single-cell RNA-seq data.

scRNA-tools

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

dtm2451

Customizable workflows based on snakemake and python for the analysis of NGS data

maxplanck-ie

Fast and accurate gene fusion detection from RNA-Seq data

suhrig

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

vanheeringen-lab

A software package for analyzing snapshots of developmental processes

broadinstitute

tallulandrews

RNAseq analysis notes from Ming Tang

crazyhottommy

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

nf-core