bisulfite-sequencing topic
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Arioc
Arioc: GPU-accelerated DNA short-read alignment
dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
defiant
Differential methylation: Easy, Fast, Identification and ANnoTation
pigx
Pipelines in genomics
bisulfite-seq-tools
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing...
BSBolt
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool