chip-seq topic

ChIP-seq analysis notes from Ming Tang

crazyhottommy

Tools to process and analyze deep sequencing data.

deeptools

A collection of Galaxy-related training material

galaxyproject

MACS -- Model-based Analysis of ChIP-Seq

macs3-project

ChIP-seq peak-calling, QC and differential analysis pipeline.

nf-core

Customizable workflows based on snakemake and python for the analysis of NGS data

maxplanck-ie

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

vanheeringen-lab

AQUAS TF and histone ChIP-seq pipeline

kundajelab

A graphical user interface for distributed data processing of high throughput genomics

UMMS-Biocore

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

CostaLab