snakemake topic

PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

PyPSA

The uncompromising Snakemake code formatter

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake

Sequana: a set of Snakemake NGS pipelines

sequana

A SingleCell RNASeq pre-processing snakemake workflow

Hoohm

ATLAS - Three commands to start analyzing your metagenome data

metagenome-atlas

A robust, extensible metagenomics pipeline

sunbeam-labs

Customizable workflows based on snakemake and python for the analysis of NGS data

maxplanck-ie

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

vanheeringen-lab

This Snakemake pipeline implements the GATK best-practices workflow

snakemake-workflows