prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
Trying to run Prokka in a M1 Mac and running into the error _:sh:/usr/local/bin/tbl2asn: cannot execute binary file Could not determine version of tbl2asn - please install version 24.3 or...
Hello, I am trying to run Prokka locally. When I attempt a test run I get the following error message: **Error: Too many positional arguments (1), the offending value: -...
Hello, I am running Prokka on my M1 Mac Book Pro. I encountered an error related to tbl2asn during my test runs. First I got an error regarding tbl2asn: Could...
Dear, I am on my MacOS (Ventura 13.6) ``prokka`` does not find ``signalp`` with ``--gram`` option on ``` [10:32:32] Determined tbl2asn version is 025008 from 'tbl2asn 25.8 arguments:' [10:32:32] You...
Hi, First thanks a lot for making this tool. It's super useful in my research on gut metagenomics. While using it I came up with a few modifications that helped...
Hi, I would like to see the partial genes and the complete genes when performing metagenomic analysis. Is there a way to identify both? Thanks, micromania
Dear @tseemann - is Prokka still being maintained by you or someone in your group? I had some questions about protein families HMM databases, but it appears not many posts...
Hello, Is there a possibility to input fasta files with aminoacids as input rather than DNA sequences? Technically to eliminate the step of using Prodigal as I already have my...
Hello, i have installed prokka with conda few days ago prokka 1.14.6. After annotating some fasta files with the following line: 'prokka final.contigs.fa --outdir s01 --prefix metagG --metagenome --kingdom Bacteria',...
Hi, I downloaded prokka using conda and am running it with a custom database (PHROGs: https://phrogs.lmge.uca.fr/) to annotate prokaryotic viruses. I am doing this on my university's HPC using a...
