prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
Are there percent identity or coverage cutoffs when determining which blast+ hits from the UnitProt database are included in the annotation?
Hallo, I used Prokka via Galaxy Europe to annotate _de novo_ bacterial genome assemblies. I loaded the genbank-files into Clone Manager in order to rotate the molecule so that the...
I would like to get just the structural annotation (position of cds, trna, rna, etc ) and not the functional annotation (product names of each CDS), Can I skip the...
Hi! Not sure if this is the best spot for this, but I recently found that the straightforward `conda install -c bioconda prokka` doesn't work. The workaround I found was...
Hi, would it have any unforseen consequences to remove https://github.com/tseemann/prokka/blob/c335b7a6539a960ff4d98af6d2c6eb9bc1b7ebde/bin/prokka#L690 ? It would be useful to get an output gff with all rows having uniform attribute fields starting with `ID`....
I am getting error while running prokka: $ prokka --rfam --prefix protein --locustag genome --gcode 11 --kingdom Bacteria --cpus 1 --rnammer --notrna --outdir ./ --force --quiet --locustag NoNick /home/hut514/bin/TIGER/genome.fa Result:...
Hello, I performed whole genome sequencing of pure culture bacteria using linux tools. I used sickle, megahit, bbmap and then metabat for binning process. I got the bin which is...
Hi, when running prokka 1.14.6 with --rfam 0 ncRNAs are found. With prokka 1.13 several were detected and running the cmscan code from the logfile separately also resulted in the...
Prokka error
It shows following error but it seems I have 'hmmer' in my system. error: Failed to load module Bio::SearchIO::hmmer3. Can't locate Bio/SearchIO/hmmer3.pm in @INC (you may need to install the...
