prokka
prokka copied to clipboard
tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
Regarding to #65 and #386 PR I would like to propose to disable `tbl2asn` by default. It does not check tbl2asn at start, It resolves expiring issues. Anyone can still...
I am using prokka (an amazing program, BTW) to annotate bacterial genomes for submission to NCBI. Today, I uploaded the sqn files for 23 genomes, and the all failed. Looking...
Is there an easy way to shut off the tbl2asn or genbank generator so we don't have to deal with contig names being too long and having to use "--center...
Hi! Lately, I experienced fragmented gene annotations in terms of two (or more) ORFs that are in close proximity and are annotated with homology to the same gene. In such...
Firstly thank you for making an awesome tool that I love using for its easy of use and what I believe to be good annotations. I recently came across this...
Rfam 14.3 was released in September. Would it be possible to release a new version of Prokka that uses the new models? Alternatively, does someone have a recipe for upgrading...
Currently, when running prodigal, prokka automatically sets anonymous (formerly metagenome) mode when the total input sequences are shorter than 100,000 bases. If a training file is specified with the `--prodigaltf`...
Hi, Not sure if this is possible... It would be nice when using the --proteins option to set a specific coverage/identity threshold for just those proteins and at the same...
Dear Torsten, I updated my system to MacOS 11.0.1. I reinstalled prokka via conda. And got a signalP version issue, which I do not understand. Prokka error: "Looking for 'signalp'...
