prokka issues

Results 156 prokka issues

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How to annotate with custom database alone?

I need to annotate TAL effectors which is highly repetitive in nature. Therefore, I would like to create TAL effector database with the available TALE protein sequences. Therefore, I would...

dineshkumarsrk

mRNA created for misc_RNA or tRNA or RNA and reported as duplicated by the ENA validator

Hi tseemann, Thanks for the great tool. I am experiencing an issue with validating files for submission to ENA after conversion with EMBLmyGFF3 which seems to be related to an...

Jeepee8820

bug

Can't find required 'find' in your $PATH

Had this issue while running prokka ![find_error](https://user-images.githubusercontent.com/110957857/184806167-f69ecc05-2011-432e-ab71-a780d05caa7e.PNG) any advice to debug this issue?

junejbkim95

Preserving prodigal naming in fasta headers

Hello, I would like to use prokka to create annotations while keeping the fasta headers produced by prodigal. I am using a tool downstream that depends on the prodigal-produced headers....

nschan

Prokka install fails because Aragorn website is down.

Hi, I'm currently trying to install Prokka, but as the website for Aragorn is down, this fails. Below is the readout. Is there an alternative way for me to install...

ranitori

Can't find required 'less' in your $PATH

prokka --quiet --cpus 30 --outdir /jinyu/metawrap-o/metawrap-annotate_bins-o/53-metawrap-annotate_bins-o/prokka_out/bin.1 --prefix bin.1 /jinyu/metawrap-o/metawrap-annotate_bins-o/53-metawrap-annotate_bins-o/tmp_bin.fa [03:15:05] Can't find required **'less'** in your $PATH ************************************************************************************************************************ ***** Something possibly went wrong with annotating bin.1. Proceeding anyways ***** ************************************************************************************************************************...

51mystic