prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
[SRR10038094__Chin_OBreak.gbk.txt](https://github.com/tseemann/prokka/files/10171418/SRR10038094__Chin_OBreak.gbk.txt)
Dear tseemann I've been using prokka and it's an amazing tool. Thank you for your contribution to the scientific community. I am wondering if I can use prokka from anotalty...
Hi I updated README.md file to include more instructions for docker and singularity users.
I was working with the docker image, and kept getting the error `contig.fa is not a readable non-empty FASTA file`. I was using the following command as it is described...
I observed difference for the `CRISPR:` line in the statistics txt file between two genomes that harbor the same 3 `/product="putative CRISPR-associated protein"` (equal protein sequence). The unique difference is...
Hello, I am finding issues with running PROKKA through Bioconda. Is there any other alternative aside the using the condo's on command line terminal?
Feature request: Preserve input order of genomes. I would love to customize the order of inputs so that the similar regions are easier to visualize in the graph format.
Hi, I am trying to run prokka from the docker image, and keep encountering the error that my input '* is not a readable non-empty FASTA file'. The files I...
I have been constantly getting this error since the past 1 week, whenever I try to run prokka on my metagenome assembly "Running: cat mydir1C_metagenome\/air\.sprot\.tmp\.3054131\.faa | parallel --gnu --plain -j...
(bioinfo) [zhujiang@login1 example]$ prokka ./fasta_example_genomic.fna [19:52:08] This is prokka 1.13.3 [19:52:08] Written by Torsten Seemann [19:52:08] Homepage is https://github.com/tseemann/prokka [19:52:08] Local time is Fri Apr 12 19:52:08 2024 [19:52:08] You...
