genome-annotation topic

A tool for discovering transposable elements and describing patterns of genome evolution

sestaton

A toolkit for annotation of transposable element families from unassembled sequence reads

sestaton

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

tariqdaouda

Extensive de-novo TE Annotator

oushujun

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

oushujun

Eukaryotic Genome Annotation Pipeline

nextgenusfs

Genomic Data Retrieval with R

ropensci

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

GMOD

:zap: :aquarius: Rapid prokaryotic genome annotation

tseemann

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

oschwengers