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tbl2asn issues, again (in a M1 Macbook)

Open anbadilla opened this issue 1 year ago • 4 comments

Trying to run Prokka in a M1 Mac and running into the error :sh:/usr/local/bin/tbl2asn: cannot execute binary file Could not determine version of tbl2asn - please install version 24.3 or higher

Wondering if someone has been able to fix it. I've replaced the tbl2asn several times and clearly has not worked. Thanks!

anbadilla avatar Jul 02 '23 23:07 anbadilla

Have you solve this problem? I had the same problem.

ypxyuan avatar Aug 02 '23 06:08 ypxyuan

I did not solve it. I ended up using a remote server for my analysis. Sorry!

anbadilla avatar Aug 02 '23 21:08 anbadilla

This stops prokka running on M1 or M2 chip. Looking at the NCBI website downloads tbl2asn has now been replaced by table2asn. tbl2asn does not run on M1/2 but table2asn does. I replaced the prokka download version of tbl2asn with the table2asn executable and renamed it tbl2asn - sadly this does not work as get the version number issue mentioned above. This needs a fix in the prokka code when calling this executable

tomjevans avatar Aug 09 '23 11:08 tomjevans

Dear @tomjevans @anbadilla @ypxyuan

Check this instruction to fix tbl2ans problem

zagrosman avatar Oct 06 '23 17:10 zagrosman