prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
as uniprot database provided is 2019-11 release, I wanted to update it so tried this script but I cant install module SWISS::Entry using cpan or cpanm on ubuntu, using Conda...
Hi Mr. @tseemann ! Thank you for creating this wonderful software tool! Currently, I using Prokka to annotate around 2000 WGS from _H. pylori_. I also tried to add a...
Hello! I'm new to Prokka, but I have noticed that the 'Wizard' and 'NCBI Genbank submitter' sections recommend Sequin, which NCBI retired in favour of Genome Workbench in January 2021...
(base) lrt@lrt-VirtualBox:/tmp$ prokka --compliant --centre X --locustag 9249 --outdir /home/lrt/Documentos/9249_todo/prokka_output_9249 --force --prefix 9249 --addgenes --rfam /home/lrt/Documentos/9249_todo/filtrado.fasta [14:20:14] This is prokka 1.14.6 [14:20:14] Written by Torsten Seemann [14:20:14] Homepage is https://github.com/tseemann/prokka...
here is my error message: ``` [23:55:15] Looking for 'minced' - found /usr/local/bin/minced Error: A JNI error has occurred, please check your installation and try again Exception in thread "main"...
It seems **NOT**! but unfortunately, my previous work used **blast v2.10**. I installed prokka several months ago, I didn't see there is a big update recently. Anyway, hope you can...
Yes this is a known issue. Forever tbl2asn aims to solve this problem by "faking" tbl2asn version/date but in tbl2asn latest update they must have changed something. ``` wget -O...
I often use GFF from Prodigal as most programs like featureCounts take GFF as input. Is it possible to include GFF as input for Prokka in future releases?
@tseemann Hi Torsten Seemann, Thank you very much for your wonderful Prokka, I used it to annotation my bacteria before, now I would like to use it on my metatranscriptome...
