prokka
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tseemann
:zap: :aquarius: Rapid prokaryotic genome annotation
I've got a result like below without --cdsrnaolap set. contig_7_pilon Infernal:001001 misc_RNA 275421 276175 457.7 - . ID=bins.tsv.054_01659 contig_7_pilon Prodigal:002006 CDS 275498 276202 . - 0 ID=bins.tsv.054_01660 Would you mind...
Hi, are the core databases also updated with every update? How can I update the core database by myself? Thanks in advance.
There is a prokka software running error has been bothering me for many days. First, the error content and log file prompt is: [17:29:43] Could not run command: cat test3\.prokka\/test\.sprot\.tmp\.45976\.faa...
We are trying to install and run prokka in our Linux system but we have plenty of errors. After solving some problems with conda and perl versions we get this...
conda version should be update to v1.14 to recognize blast v2.12 related issue: https://github.com/tseemann/prokka/issues/573#issuecomment-864046750 > Yes, it's clear that pokka v1.13 cannot - run with blast v2.11, and you are...
Hello, I have a problem with running prokka from conda. The problem is that perl libraries that use cpp code can not be compiled, if someone is ready to track...
Hello @tseemann team: I am new to prokka. I set up prokka on our HPC cluster. after the installation, /risapps/noarch/prokka/1.14.6 is my git clone location, run $ /risapps/noarch/prokka/1.14.6/bin/prokka contigs.fa [23:03:13]...
Hi, I am a newbie to assembly-annotation work and recently i needed to run prokka twice for the same sets of samples but found a different head for gff files...
Is there a way to make the locus tag be the original contig name like RAST does?
Hi All, I have got the Prokka-annotated gene names based on the WGS, then I aim to design primers to target the differentiated gene expressions. While, some gene name cannot...
