prokka
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How to annotate with custom database alone?
I need to annotate TAL effectors which is highly repetitive in nature. Therefore, I would like to create TAL effector database with the available TALE protein sequences. Therefore, I would like to use TAL effector database alone without using other default db installed in the prokka pipeline. In detail I would like to have TALEs annotation only for my genome of interest. Could you please help me to do the same.
Thank you in advance.