fastq topic
fastqp
Simple FASTQ quality assessment using Python
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
viral-ngs
Viral genomics analysis pipelines
gtz
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
MutScan
Detect and visualize target mutations by scanning FastQ files directly
pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.