haplotypes topic
List
haplotypes repositories
octopus
298
Stars
37
Forks
Watchers
Bayesian haplotype-based mutation calling
starfish
22
Stars
2
Forks
Watchers
Intersect multiple VCF files with haplotype awareness
VCF-Simplify
45
Stars
12
Forks
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A python parser to simplify and build the VCF (Variant Call Format).
haploclique
24
Stars
35
Forks
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Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
gretel
31
Stars
4
Forks
Watchers
An algorithm for recovering haplotypes from metagenomes
minorseq
15
Stars
6
Forks
Watchers
Minor Variant Calling and Phasing Tools
MCHap
17
Stars
3
Forks
Watchers
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
ClairS
56
Stars
5
Forks
Watchers
ClairS - a deep-learning method for long-read somatic small variant calling
bamsplit
15
Stars
1
Forks
Watchers
Split a BAM file by haplotype support