transcriptomics topic
starfish
starfish: unified pipelines for image-based transcriptomics
diffxpy
Differential expression analysis for single-cell RNA-seq data.
scde
R package for analyzing single-cell RNA-seq data
anndata
Annotated data.
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
scrattch.hicat
Hierarchical, iterative clustering for analysis of transcriptomics data in R
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
dammit
just annotate it, dammit!