The Lab for Data Intensive Biology

icon indicating a website link http://ivory.idyll.org/lab/

icon location University of California, Davis, School of Veterinary Medicine, Davis, California, USA icon location Previously "Genomics, Evolution, and Development Lab" @ Michigan State University

Results 8 repositories owned by The Lab for Data Intensive Biology

khmer

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In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

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dammit

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just annotate it, dammit!

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2016-pycon-tutorial

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Materials for "Creating, building, testing, and documenting a Python project - a hands-on HOWTO - PyCon 2016"

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2018-ncbi-lineages

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Extract lineage CSVs from NCBI for use with sourmash lca.

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charcoal

49
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Remove contaminated contigs from genomes using k-mers and taxonomies.

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dib-MMETSP

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Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)

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elvers

28
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3
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(formerly eelpond) an automated RNA-Seq workflow system

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genome-grist

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map Illumina metagenomes to genomes!

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