human-cell-atlas topic

Deep probabilistic analysis of single-cell and spatial omics data

scverse

Reference mapping for single-cell genomics

theislab

R toolkit for single cell genomics

satijalab

starfish: unified pipelines for image-based transcriptomics

spacetx

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

iSEE

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

hemberg-lab

This contains the dataset for comparing scRNA-seq analysis methods

LuyiTian

A tool for unsupervised projection of single cell RNA-seq data

hemberg-lab

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

drisso

Discrete Distributional Differential Expression

hemberg-lab