JEFworks Lab

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icon location JEFworks Lab at Johns Hopkins University

Results 8 repositories owned by JEFworks Lab

HoneyBADGER

96
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31
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HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

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genomic-data-visualization

15
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19
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Course website for Genomic Data Visualization

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MERINGUE

52
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5
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characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

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MERmaid

27
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5
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WebGL-based viewer for spatially-resolved transcriptomics data

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R-style-guide

16
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1
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Best practices for readable, sharable, and verifiable R code

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STdeconvolve

50
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7
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Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

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veloviz

33
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6
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RNA-velocity informed embeddings for visualizing cellular trajectories

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STalign

56
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9
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Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

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