Harvard Medical School - Department of Biomedical Informatics
Harvard Medical School - Department of Biomedical Informatics
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
scde
R package for analyzing single-cell RNA-seq data
vizarr
A minimal Zarr image viewer based on Viv.
3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
brainmapr
R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain...
upset-altair-notebook
Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
halyos
Redesigning the Patient Portal Experience with SMART on FHIR.
chromoscope
Interactive multiscale visualization for structural variation in human genomes