scanpy topic

Single-cell analysis in Python. Scales to >1M cells.

scverse

muon is a multimodal omics Python framework

scverse

Annotated data.

scverse

Convert between AnnData and SingleCellExperiment

theislab

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also pe...

interactivereport

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

zhanghao-njmu

Learning cell communication from spatial graphs of cells

theislab

Bring your single-cell data to life

lilab-bcb

pseudobulking on an AnnData object

noamteyssier