htslib topic

SeqAn's official repository.

seqan

C library for high-throughput sequencing data formats

samtools

nim wrapper for htslib for parsing genomics data files

brentp

cython + htslib == fast VCF and BCF processing

brentp

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

walaj

Graph realignment tools for structural variants

Illumina

BigWig manpulation tools using libBigWig and htslib

cancerit

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

brentp

a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

Zilong-Li