scrna-seq topic

A list of scRNA-seq analysis tools

mdozmorov

Table of software for the analysis of single-cell RNA-seq data.

scRNA-tools

Simple simulation of single-cell RNA sequencing data

Oshlack

Single cell perturbation prediction

theislab

R package for the joint analysis of multiple single-cell RNA-seq datasets

kharchenkolab

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

pinellolab

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

kharchenkolab

Spatial alignment of single cell transcriptomic data.

broadinstitute

muon is a multimodal omics Python framework

scverse

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

kharchenkolab