cite-seq topic

Deep probabilistic analysis of single-cell and spatial omics data

scverse

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...

rezakj

muon is a multimodal omics Python framework

scverse

Single cell analysis in the browser

kanaverse

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

alexisvdb

scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics

Novartis

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

parashardhapola

scPerturb: A resource and a python/R tool for single-cell perturbation data

sanderlab

Normalize CITEseq Data

niaid