batch-correction topic

List batch-correction repositories

scarches

314
Stars
49
Forks
Watchers

Reference mapping for single-cell genomics

conos

189
Stars
38
Forks
Watchers

R package for the joint analysis of multiple single-cell RNA-seq datasets

Harmony

44
Stars
12
Forks
Watchers

Harmony framework for connecting scRNA-seq data from discrete time points

DigitalCellSorter

23
Stars
10
Forks
Watchers

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

sccomp

90
Stars
7
Forks
Watchers

Testing differences in cell type proportions from single-cell data.

batchelor

18
Stars
7
Forks
Watchers

Clone of the Bioconductor repository for the batchelor package.

simspec

27
Stars
3
Forks
Watchers

Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)