Oshlack

Simple simulation of single-cell RNA sequencing data

Oshlack

ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.

Oshlack

Gene Fusion Visualiser

Oshlack

Software for clustering de novo assembled transcripts and counting overlapping reads

Oshlack

JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

Oshlack

Building SuperTranscripts: A linear representation of transcriptome data

Oshlack

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

Oshlack

Combine reference and assembled transcriptomes for RNA-Seq analysis

Oshlack

R package for specialised analysis of single cell data

Oshlack

Data and analysis for the Splatter paper

Oshlack