scatac-seq topic

Single-cell Transcriptome and Regulome Analysis Pipeline

liulab-dfci

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

pinellolab

muon is a multimodal omics Python framework

scverse

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

alexisvdb

Accurate and fast cell marker gene identification with COSG

genecell

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

zhanghao-njmu

A collection of tools to process single-cell omics datasets.

shiquan

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

parashardhapola

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

wukevin

scPerturb: A resource and a python/R tool for single-cell perturbation data

sanderlab