dna-sequences topic

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

lucidrains

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

OpenHero

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Griffan

Sequence alignment tools

BioJulia

R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R

nickpoison

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

asntech

Find and visualize rearrangements in DNA sequences

smortezah

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

EricArcher

🍶 Genome assembly with short sequence reads

bcgsc

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

muellan