cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Hello, I have a problem of files synchronisation. Once I clone cobratoolbox, I get some of files in my folder but not all of them. I notice that the folders...
*Please include a short description of problem here* When using FBA to analyze microbial growth, how to associate stress factors such as temperature and pH into the model. **I hereby...
After recently updating COBRA with initCobraToolbox(true), CPLEX is no longer working properly. >> solverOK=changeCobraSolver('ibm_cplex','LP') > changeCobraSolver: Solver ibm_cplex is installed but not working properly. solverOK = logical 0 Is my...
Problem: when using MATLAB 2019a with CPLEX 12.10 on Windows 10x64 [enterprise and professional SKUs], generateMexFastFVA.m produces the following warning and error: ``` >> generateMexFastFVA > The solver compatibility is...
*Please include a short description of problem here how to get codes for creating a community model for probiotics. also how to simulate this in recon 3d using different diets...
*Please include a short description of problem here* how to get codes for developing community modelling of probiotics in MATLAB. also how to simulate this in recon 3d ? **I...
Using gurobi as the QP (and LP) solvers, I get an error on line 766: `resultgurobi = gurobi(gurobiQP,param);` since the variable `param` is not defined in the case where gurobi...
*Please include a short description of problem here* I get the following error when I initialise cobra, however I have git installed. xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing...
*Please include a short description of problem here* Hi I am running the latest COBRA (just installed) on Matlab 2020b (on a W10 machine). I am calling directly `fluxVariability` with...
I am trying to download CobraToolbox for the first time. This is the error I get when I try to run initCobraToolbox: Checking if git is installed ... Done (version:...
