simulating gut microbiome using recon 3d

[bab135]

*Please include a short description of problem here how to get codes for creating a community model for probiotics. also how to simulate this in recon 3d using different diets I hereby confirm that I have:

• [ ] Tried to solve the issue on my own
• [ ] Retried to run my code with the latest version of The COBRA Toolbox
• [ ] Checked that a similar issue has not already been opened

(Note: You may replace [ ] with [X] to check the box)

[almut-heinken]

Hi @bab135 have a look at the updated mgPipe tutorial (Microbiome Modeling Tooolbox). That should address what you are trying to do. best, Almut