cobratoolbox
cobratoolbox copied to clipboard
opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The documentation (https://opencobra.github.io/cobratoolbox/stable/index.html) seems outdated (e.g. installation instructions do not mention the newest version of MATLAB) and also broken (e.g. the icons are not displayed properly or the links to...
Good afternoon, I have run into a problem with the chrrSampler, more specifically the rounding part of it. The model I am using is the latest version of the Human1...
*Warning in the function 'prepareFastGapFill', it throws out the following warning: Warning: Reaction rxn00001has more than one replicate Error in checkDuplicateRxn (line 95) Error in mergeTwoModels (line 158) Error in...
Good afternoon, It recently came to my attention that there is an issue with the design of _minimizeModelFlux_. Indeed, by default when no value is provided for its osenseStr parameter,...
I changed to a new computer and reinstalled the cobratoolbox. The solver and so on were fine after checking with initCobraToolbox. Then I was trying to continue the work leftover...
*Please include a short description of enhancement here* **I hereby confirm that I have:** - [ ] Tested my code on my own machine - [ ] Followed the guidelines...
Passing non-solver specific parameters to a solver gives an error. But this approach to split parameter structures [problemTypeParams, extraParams] = parseSolverParameters(problemType, varargin) and use extraParams for the solver needs to...
Hello! I'm having issues running `singleGeneDeletion`. Speficially, the call to the WT `optimizeCbModel` returns a solution with `NaN`, consequently leading to all my growth rate ratios also being `NaN`. I've...
Hello dear Community, I've faced this error using MgPipe: Error using createPersonalizedModel Unable to perform assignment because the indices on the left side are not compatible with the size of...
- minor changes to Microbiome Modeling Toolbox to avoid bugs regarding diet - changed the name of the runPipeline function in Demeter to avoid problems **I hereby confirm that I...
