cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
There is a new function in cobratoolbox named as box.m, which would conflicts with the matlab built-in function box.m. **I hereby confirm that I have:** - [x] Tried to solve...
Hi, I am trying to use the newly added **rMTA** function in the toolbox. I have a few queries. I am **using iMAT** from the toolbox to get reconstructed models...
*Hi everyone, I am trying to create a community model witj Microbiome Modelling Toolbox under COBRA, but I am getting this error all the time I run initMgPipe command. Could...
Hi, I am trying to (correctly) install cobra, so far unsuccessfully, and I would like to ask for some advice. When running InitCobraToolbox the initialization does not result in any...
*Please include a short description of problem here* Hi, my cobra toolbox stopped working because it was an old version, upon installing a new version: Entering 'external/analysis/CnaCobraInterface' Your branch is...
Most/All of the tutorials at https://opencobra.github.io/cobratoolbox/stable/tutorials/ are not available because loading does not work or it is so slow to the point of being static (and connection times out). Could...
Hi. I need to use the input exportModel(model, filename...), but result in an error: WARNING: There is no unconstrained field in the model structure. This means that no metabolites are...
This is regarding the reactions that are completely reversible and tagged with `_r` by `convertToIrreversible`. Once the reaction classes are returned, the assignment to the different classes only consider `_[f|b]`,...
*Please include a short description of problem here* I have tested the following to install the lastest cobratoolbox, and they all failed 1. using git to download cobratoolbox 2. download...
I get the following error: `Warning: Name is nonexistent or not a directory: C:\Modeling\cobratoolbox\src\analysis\thermo\vonBertalanffy\initVonBertalanffy.m > In path (line 109) In addpath (line 86) In initCobraToolbox (line 655) ` **I hereby...
