cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
*When I start COBRA toolbox I have this: Support LP MILP QP MIQP NLP ---------------------------------------------------------------------- gurobi active 1 1 1 1 - ibm_cplex active 0 0 0 0 - tomlab_cplex...
In the tutorial: [https://opencobra.github.io/cobratoolbox/latest/tutorials/tutorialOptGene.html] I first have an a problem with the `selectedGenelist` where the first cell is empty. I "resolved" this by deleting the first entry using `selectedGeneList(1) =...
> Adding all the files of The COBRA Toolbox ... Done. > Define CB map output... set to svg. > TranslateSBML is installed and working properly. > Configuring solver environment...
*Please include a short description of problem here* I downloaded Recon3DModel from vmh.life and loaded it into MATLAB but when i run the verifyModel function i run into this error...
I am running the toolbox in a Linux machine. The way to reproduce this error is by calling buildFluxDistLayout, but as this method uses postMINERVArequest internally the actual issue happens...
So I've tried to run the Optforce tutorial code using the E.Coli matlab model (iAF1260.mat) provided that I added one branched off reaction to produce flavanones. But the FindMustLL function...
Given public open source projects have free support for cloud ci services, consider leveraging one of them here. https://blogs.mathworks.com/developer/2020/12/15/cloud-ci-services/ **I hereby confirm that I have:** - [ ] Tried to...
*Please include a short description of problem here* I'm trying to figure out how to correctly load an excel file into and cobra model, so I checked the documentation here:...
*Please include a short description of problem here* When I run the 'tutorial_microbeMicrobeInteractions.m', I encountered one error as follow: > Unrecognized function or variable 'removeBalancedCycles'. > > Error in createMultipleSpeciesModel...
*Please include a short description of problem here* One of our masters students just across this issue when trying to use the latest cobra on windows with matlab. ``` >>...
