metabolic-models topic

COBRApy is a package for constraint-based modeling of metabolic networks.

opencobra

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

opencobra

The consensus GEM for Saccharomyces cerevisiae

SysBioChalmers

Python package to study microbial communities using metabolic modeling.

micom-dev

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

franciscozorrilla

memote – the genome-scale metabolic model test suite

opencobra

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

jotech

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

SysBioChalmers

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

jclachance

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

SBRG