metabolic-engineering topic
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
act
Computational synthetic biology: Predicting DNA edits for bioengineering
RAVEN
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
ark
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
CNApy
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets,...
MM
Infer metabolic directions from moment differences of mass-weighted intensity distributions
RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
teemi
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platfor...