cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
We made several of the requested changes, however, we were not able to integrate the use of .csv data files for tests, since we make the use of multiple data...
I am currently manipulating a model to add a new compartment, so the structure looks like this: [c] [e] (new ) [NewComp] (new ) [] 1) modified original EX reactions...
Can't undrestand why luLI and LuSI are not considered as a compartment in Harvey and Harvetta models
Hello every one, I m writing to you because I can't understand why in the Harvey & Harvetta model , the luLI, and luSI are not considered as a compartment...
Hi, I have used older cobra toolbox versions fine for a while. However, after installing the latest version of cobra toolbox, following instructions (https://opencobra.github.io/cobratoolbox/latest/installation.html) with Matlab 2015b, initCobraToolbox reports the...
Hi there, I am trying to install cobratoolbox using the following command "git clone --depth=1 https://github.com/opencobra/cobratoolbox.git cobratoolbox". However, three folders, binary, papers and tutorials, are empty. I think it is...
*I am working in matlab R2016**a** with CPLEX_Studio1271. When trying initCobraToolbox (just installed most recent version), I get following error: > Initializing and updating submodules (this may take a while)...Undefined...
The `[expressionRxns, parsedGPR, gene_used] = mapExpressionToReactions(model, expData);` is giving expressionRxns variable as entirely NaN values. But parsedGPR and gene_used return cell array. The genes in expData are in entrez format...
Hi everyone, I recently installed CobraToolbox as well as Gurobi version 9.50 in order to use `uFBA`. However, when I run the test function `testuFBA`, I have the following message...
Hello, I am trying to use "singleGeneDeletion" function but i have some problems with no results. This is my model:  Then I run: [grRatio, grRateKO, grRateWT,...
Hello, I am trying to run "fastFVA" function of cobraToolBox using Matlab R2018b on Linux 18. This is the model I am using: http://bigg.ucsd.edu/models/iEK1008. I run this: `[v11, v12] =...