metabolomics topic
cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
OpenMS
The codebase of the OpenMS project
matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
ElMaven
LC-MS data processing tool for large-scale metabolomics experiments.
mzkit
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
RHermes
RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
DAtest
Compare different differential abundance and expression methods
ark
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
melonnpan
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles