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Error in 'tutorial_microbeMicrobeInteractions'

Open PandengWang opened this issue 3 years ago • 1 comments

Please include a short description of problem here

When I run the 'tutorial_microbeMicrobeInteractions.m', I encountered one error as follow:

Unrecognized function or variable 'removeBalancedCycles'.

Error in createMultipleSpeciesModel (line 165) model = removeBalancedCycles(model, biomassReaction, database,unionRxns);

Error in joinModelsPairwiseFromList (line 155) [pairedModel] = createMultipleSpeciesModel(models, 'nameTagsModels', nameTagsModels,'mergeGenesFlag', mergeGenesFlag);

After I try to search removeBalancedCycles function in carbratoolbox directory, I didn't find this file.

I hereby confirm that I have:

  • [x] Tried to solve the issue on my own
  • [X] Retried to run my code with the latest version of The COBRA Toolbox
  • [X] Checked that a similar issue has not already been opened

(Note: You may replace [ ] with [X] to check the box)

PandengWang avatar Apr 01 '21 07:04 PandengWang

Hi @PandengWang , this issue should have been fixed by a recent commit. Best regards, Almut

almut-heinken avatar Apr 30 '21 19:04 almut-heinken