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FindMustLL never finishes with E coli standard model

Open wlawler45 opened this issue 3 years ago • 4 comments

So I've tried to run the Optforce tutorial code using the E.Coli matlab model (iAF1260.mat) provided that I added one branched off reaction to produce flavanones. But the FindMustLL function seems to loop infinitely. It does write to console and the functions before then work but it never gets past FindMustLL, its been running for almost 8 hours now. Is there any help that you could offer me on why that's happening? Please let me know if you need any additional information from me to help. Thank you.

wlawler45 avatar May 13 '21 15:05 wlawler45

post to https://groups.google.com/g/cobra-toolbox

On Thu, 13 May 2021 at 16:20, wlawler45 @.***> wrote:

So I've tried to run the Optforce tutorial code using the E.Coli matlab model provided that I added one branched off reaction to produce flavanones. But the FindMustLL function seems to loop infinitely. It does write to console and the functions before then work but it never gets past FindMustLL, its been running for almost 8 hours now. Is there any help that you could offer me on why that's happening? Please let me know if you need any additional information from me to help. Thank you.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/opencobra/cobratoolbox/issues/1770, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAQMEOVJUZ32FKI2TXSVGPTTNPU3BANCNFSM442XUA3A .

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Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.

Assistant Professor, Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University. https://www.universiteitleiden.nl/en/staffmembers/ronan-fleming & H2020 Project Coordinator, Systems Medicine of Mitochondrial Parkinson’s Disease, http://sysmedpd.eu & Senior Lecturer, School of Medicine, National University of Ireland, Galway.

Peer-reviewed publications: https://goo.gl/FZPG23 Mobile: +353 852 109 806 Skype: ronan.fleming

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rmtfleming avatar May 13 '21 15:05 rmtfleming

Do I need to be a member to make a post?

wlawler45 avatar May 13 '21 17:05 wlawler45

y

On Thu, 13 May 2021 at 18:21, wlawler45 @.***> wrote:

Do I need to be a member to make a post?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/opencobra/cobratoolbox/issues/1770#issuecomment-840707681, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAQMEOWMYHT5GMETCWM7KJ3TNQDBZANCNFSM442XUA3A .

--

Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.

Assistant Professor, Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University. https://www.universiteitleiden.nl/en/staffmembers/ronan-fleming & H2020 Project Coordinator, Systems Medicine of Mitochondrial Parkinson’s Disease, http://sysmedpd.eu & Senior Lecturer, School of Medicine, National University of Ireland, Galway.

Peer-reviewed publications: https://goo.gl/FZPG23 Mobile: +353 852 109 806 Skype: ronan.fleming

(This message is confidential and may contain privileged information. It is intended for the named recipient only. If you receive it in error please notify me and permanently delete the original message and any copies.)

rmtfleming avatar May 13 '21 18:05 rmtfleming

I submitted a membership request but I still haven't been approved. Do I need to do something else?

wlawler45 avatar May 13 '21 19:05 wlawler45