rare-variant-analysis topic
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rare-variant-analysis repositories
slivar
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23
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genetic variant expressions, annotation, and filtering for great good.
STAAR
84
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38
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An R package for performing STAAR procedure in whole-genome sequencing studies
gnomAD_DB
29
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This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
MetaSTAAR
20
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5
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An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
STAARpipeline
51
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16
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An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
STAARpipeline-Tutorial
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The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary