Brent Pedersen

icon indicating an email [email protected]

icon location Utrecht, The Netherlands icon location Doing genomics from the Netherlands

Results 39 repositories owned by Brent Pedersen

cigar

39
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simple library for dealing with SAM cigar strings

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combat.py

99
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python / numpy / pandas / patsy version of ComBat for removing batch effects.

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combined-pvalues

43
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combining p-values using modified stouffer-liptak for spatially correlated results (probes)

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cruzdb

133
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41
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python access to UCSC genomes database

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fastbit-python

26
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pythonic access to fastbit

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fishers_exact_test

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Fishers Exact Test for Python (Cython)

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gargs

129
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better(?) xargs in go

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geneimpacts

31
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prioritize effects of variant annotations from VEP, SnpEff, et al.

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genoiser

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0
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use the noise

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go-chartjs

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golang library to make https://chartjs.org/ plots (this is vanilla #golang, not gopherjs)

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