Brent Pedersen

useful command-line tools written to showcase hts-nim

brentp

fast easy interval overlapping for nim-lang

brentp

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig

brentp

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

brentp

find large indels (in the blind spot between GATK/freebayes and SV callers)

brentp

(WIP) best-practices workflow for rare disease

brentp

seqcover allows users to view coverage for hundreds of genes and dozens of samples

brentp

overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites

brentp

fast lua string operations

brentp