Brent Pedersen
Brent Pedersen
hts-nim-tools
useful command-line tools written to showcase hts-nim
nim-lapper
fast easy interval overlapping for nim-lang
bigwig-nim
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
hts-python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
indelope
find large indels (in the blind spot between GATK/freebayes and SV callers)
rare-disease-wf
(WIP) best-practices workflow for rare disease
seqcover
seqcover allows users to view coverage for hundreds of genes and dozens of samples
fraguracy
overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites