genotype topic
graphtyper
Population-scale genotyping using pangenome graphs
rvtests
Rare variant test software for next generation sequencing data
lineage
tools for genetic genealogy and the analysis of consumer DNA test results
peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
svtyper
Bayesian genotyper for structural variants
pandas-plink
PLINK reader for Python.
SV2
Support Vector Structural Variation Genotyper
mgatk
mgatk: mitochondrial genome analysis toolkit
EToKi
all methods related to Enterobase
adVNTR
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data