Heng Li

A versatile pairwise aligner for genomic and spliced nucleotide sequences

lh3

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

lh3

Toolkit for processing sequences in FASTA/Q formats

lh3

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

lh3

BWK awk modified for biological data

lh3

Benchmarking programming languages/implementations for common tasks in Bioinformatics

lh3

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

lh3

Sequence-to-graph mapper and graph generator

lh3

Global alignment and alignment extension

lh3

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

lh3