Karel Břinda

icon indicating a website link brinda.eu icon indicating an email [email protected]

icon company 𝐈𝐍𝐑𝐈𝐀🇫🇷 Nat. Inst. for DigitSci & Tech icon location Rennes, France icon location Bioinformatics, Algorithms, Genomics, Pathogens, Rapid Diagnostics, and Antibiotic Resistance

Results 5 repositories owned by Karel Břinda

ococo

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Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

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samsift

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SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.

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smbl

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SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.

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Phylign

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Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

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NanoSim-H

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NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.

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