Karel Bล™inda

icon indicating a website link brinda.eu icon indicating an email [email protected]

icon company ๐ˆ๐๐‘๐ˆ๐€๐Ÿ‡ซ๐Ÿ‡ท Nat.ย Inst.ย forย DigitSciย &ย Tech icon location Rennes, France icon location Bioinformatics, Algorithms, Genomics, Pathogens, Rapid Diagnostics, and Antibiotic Resistance

Results 6 repositories owned by Karel Bล™inda

ococo

46
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3
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46
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Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

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samsift

23
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2
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23
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SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.

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smbl

23
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6
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23
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SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.

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Phylign

39
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9
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39
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Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

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NanoSim-H

18
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6
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18
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NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.

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MiniPhy

43
Stars
3
Forks
43
Watchers

Phylogenetic compression of extremely large genome collections [661k โ†˜๐Ÿญ๐Ÿฒ๐—š๐—ถ๐—• | BIGSIdata โ†˜๐Ÿฐ๐Ÿด๐—š๐—ถ๐—• | AllTheBact'23 โ†˜๐Ÿณ๐Ÿฑ๐—š๐—ถ๐—•]

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