single-cell-sequencing topic

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

statgen

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

zhanghao-njmu

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

paulranum11

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

rezakj

Brings SingleCellExperiment objects to the tidyverse

stemangiola

Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

jaydu1

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

sandberg-lab

Tool for modelling of mitochondrial heteroplasmy

single-cell-genetics