single-cell-sequencing topic
List
single-cell-sequencing repositories
popscle
43
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15
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A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
SCP
312
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66
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An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
SPLiT-Seq_demultiplexing
26
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8
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An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
scSeqR
16
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3
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This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.
tidySingleCellExperiment
34
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7
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Brings SingleCellExperiment objects to the tidyverse
VITAE
24
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7
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Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior