scrna-seq-analysis topic
Palantir
Single cell trajectory detection
souporcell
Clustering scRNAseq by genotypes
scGNN
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
MELD
Quantifying experimental perturbations at single cell resolution
EMBEDR
Statistical quality evaluation of dimensionality reduction algorithms
single-cell-papers-with-code
Papers with code for single cell related papers
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...
scClustViz
Explore and share your scRNAseq clustering results
SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells