single-cell-omics topic
nichenetr
NicheNet: predict active ligand-target links between interacting cells
dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
topometry
Systematically learn and evaluate manifolds from high-dimensional data
dynverse
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
single-cell-papers-with-code
Papers with code for single cell related papers
popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Scillus
R Package for Single-Cell Dataset Processing and Visualization
SPLiT-Seq_demultiplexing
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
dyngen
Simulating single-cell data using gene regulatory networks 📠